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rentrez - 'Entrez' in R

Provides an R interface to the NCBI's 'EUtils' API, allowing users to search databases like 'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> and 'PubMed' <https://pubmed.ncbi.nlm.nih.gov/>, process the results of those searches and pull data into their R sessions.

Last updated 4 years ago

13.40 score 198 stars 91 dependents 812 scripts 14k downloads

mmod - Modern Measures of Population Differentiation

Provides functions for measuring population divergence from genotypic data.

Last updated 8 years ago

8.14 score 11 stars 2 dependents 116 scripts 1.2k downloads

pafr - Read, Manipulate and Visualize 'Pairwise mApping Format' Data

Provides functions to read, process and visualize pairwise sequence alignments in the 'PAF' format used by 'minimap2' and other whole-genome aligners. 'minimap2' is described by Li H. (2018) <doi:10.1093/bioinformatics/bty191>.

Last updated 4 years ago

7.20 score 71 stars 1 dependents 75 scripts 307 downloads