Package: mmod 1.3.3
mmod: Modern Measures of Population Differentiation
Provides functions for measuring population divergence from genotypic data.
Authors:
mmod_1.3.3.tar.gz
mmod_1.3.3.zip(r-4.5)mmod_1.3.3.zip(r-4.4)mmod_1.3.3.zip(r-4.3)
mmod_1.3.3.tgz(r-4.4-any)mmod_1.3.3.tgz(r-4.3-any)
mmod_1.3.3.tar.gz(r-4.5-noble)mmod_1.3.3.tar.gz(r-4.4-noble)
mmod_1.3.3.tgz(r-4.4-emscripten)mmod_1.3.3.tgz(r-4.3-emscripten)
mmod.pdf |mmod.html✨
mmod/json (API)
NEWS
| # Install 'mmod' in R: |
| install.packages('mmod', repos = c('https://dwinter.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/dwinter/mmod/issues
Last updated 8 years agofrom:035cd562ee. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 04 2024 |
| R-4.5-win | OK | Nov 04 2024 |
| R-4.5-linux | OK | Nov 04 2024 |
| R-4.4-win | OK | Nov 04 2024 |
| R-4.4-mac | OK | Nov 04 2024 |
| R-4.3-win | OK | Nov 04 2024 |
| R-4.3-mac | OK | Nov 04 2024 |
Exports:as.genind.DNAbinchao_bootstrapD_Jostdiff_statsdiff_testdist.codomGst_HedrickGst_Neiharmonic_meanjacknife_populationspairwise_Dpairwise_Gst_Hedrickpairwise_Gst_NeiPhi_st_Meirmansrgenotypessummarise_bootstrap
Dependencies:ade4adegenetapebase64encbootbslibcachemcliclustercolorspacecommonmarkcpp11crayondigestdplyrfansifarverfastmapfontawesomefsgenericsggplot2gluegtablehtmltoolshttpuvigraphisobandjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepegaspermutepillarpixmappkgconfigplyrpromisesR6rappdirsRColorBrewerRcppRcppArmadilloreshape2rlangsassscalessegmentedseqinrshinysourcetoolsspstringistringrtibbletidyselectutf8vctrsveganviridisLitewithrxtable
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| as.genind.DNAbin | as.genind.DNAbin |
| Produce bootstrap samples from each subpopulation of a genind object | chao_bootstrap |
| Calculate Jost's D | D_Jost |
| Calculate differentiation statistics for a genind object | diff_stats |
| An exact test of population differentiation for genind objects | diff_test |
| Calculate distance between individual for co-dominant locus | dist.codom |
| Calculate Nei's Gst using estimators for Hs and Ht | Gst_Hedrick |
| Calculate Nei's Gst using estimators for Hs and Ht | Gst_Nei |
| Harmonic mean | harmonic_mean |
| Create jacknife samples of a genind object by population | jacknife_populations |
| Modern Measures of Differentiation | mmod-package mmod |
| Calculates pairwise values of Jost's D | pairwise_D |
| Calculates pairwise values of Hedrick's G'st | pairwise_Gst_Hedrick |
| Calculates pairwise values of Nei's Gst | pairwise_Gst_Nei |
| Calculate Phi_st from a genind object | Phi_st_Meirmans |
| Randomly create genotypes | rgenotypes |
| Apply a differentiation statistic to a bootstrap sample | summarise_bootstrap |
